| Date |
Topic |
Reading |
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Sept 12
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Horizontal gene transfer in plants
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Wickell, DA & F-W Li. 2019. On the evolutionary significance of horizontal gene transfers in plants.
Li, F-W and 33 others. 2014. Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. .
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Sept 19
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Genetics underlying establishment of arbuscular mycorrhizal symbioses
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Choi, J, W Summers, and U Paszkowski. 2018. Mechanisms underlying establishment of arbuscular mycorrhizal symbioses.
Labbé, J, W Muchero, O Czarnecki, J Wang, X Wang, AC Bryan, K Zheng, Y Yang, M Xie, J.Zhang, D Wang, P Meidl, H Wang, JL Morrell-Falvey, KR Cope, LGS Maia, J-M Ané, R Mewalal, SS Jawdy, LE Gunter, W Schackwitz, J Martin, F Le Tacon, T Li, , Z Zhang, , P Ranjan, Priya, E Lindquist, Erika, X Yang, DA Jacobson, TJ Tschaplinski, K Barry, J Schmutz, J-G Chen, & GA Tuskan. 2019. Mediation of plant–mycorrhizal interaction by a lectin receptor-like kinase. .
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Sept 26
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Molecular genetics of herbivory
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Kariñho-Betancourt, E. 2019. Coevolution: Plant-herbivore interactions and secondary metabolites of plants, in, Merillon JM., Ramawat K. (eds) Co-Evolution of Secondary Metabolites. Reference Series in Phytochemistry. Springer, Cham.
Nallu, S, JA Hill, K Don, C Sahagun, W Zhang, C Meslin, E Snell-Rood, NL Clark, NI Morehouse, J Bergelson, CW Wheat, & MR Kronforst. 2018. The molecular genetic basis of herbivory between butterflies and their host plants. .
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Oct 3
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Molecular genetics of whole genome duplication
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Clark, JW, & PCJ Donoghue. 2018. Whole-genome duplication and plant macroevolution. .
Kagale, S, SJ Robinson, J Nixon, R Xiao, T Huebert, J Condie, D Kessler, WE Clarke, PP Edger, MG Links, AG Sharpe, & IAP Parkin. 2014. Polyploid evolution of the Brassicaceae during the Cenozoic era.
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Oct 10
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Molecular analysis of a living fossils
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Royer, DL, LJ Hickey & SL Wing. 2003. Ecological conservatism in the ‘living fossil’ Ginkgo. .
Zhao, YP, G Fan, P-P Yin, S Sun, N Li, X Hong, G Hu, H Zhang, F-M Zhang, J-D Han, Y-J Hao, Q Xu, X Yang, W Xia, W Chen, H-Y Lin, R Zhang, J Chen, X-M Zheng, SM-Y Lee, J Lee, K Uehara, J Wang, H Yang, C-X Fu, X Liu, X Xu & S Ge. 2019. Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil.
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Oct 17
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Evolutionary genetics of photosynthesis
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Heyduk, K, JJ Moreno-Villena, IS Gilman, P-A Christin, and EJ Edwards. 2019. The genetics of convergent evolution: insights from plant photosynthesis.
Goolsby, EW, AJ Moore, LP Hancock, JM De Vos, and EJ Edwards. 2018. Molecular evolution of key metabolic genes during transitions to C-4 and CAM Photosynthesis.
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Oct 31
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Comapring NGS approaches for plant genetics
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Torkamaneh, D, B Boyle & F Belzile. 2018. Efficient genome-wide genotyping strategies and data integration in crop plants.
Darrier, B, J Russell, SG Milner, PE Hedley, PD Shaw, M Macaulay, LD Ramsay, C Halpin, M Mascher, DL Fleury, P Langridge, N Stein & R Waugh. 2019. A comparison of mainstream genotyping platforms for the evaluation and use of barley genetic resources. .
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Nov 7
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Conservation genomics
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Shafer, ABA, JBW Wolf, PC Alves, L Bergström, MW Bruford, I Brännström, G Colling, L Dalén, LD Meester, R Ekblom, KD Fawcett, S Fior, M Hajibabaei, JA Hill, AR Hoezel, J Höglund, EL Jensen, J Krause, TN Kristensen, M Krützen, JK McKay, AJ Norman, R Ogden, EM Österling, NJ Ouborg, J Piccolo, D Popović, CR Primmer, FA Reed, M Roumet, J Salmona, T Schenekar, MK Schwartz, G Segelbacher, H Senn, J Thaulow, M Valtonen, A Veale, P Vergeer, N Vijay, C Vilà, M Weissensteiner, L Wennerström, CW Wheat, & P Zieliński. 2015. Genomics and the challenging translation into conservation practice.
Cordeiro, EMG, CM Macrini, PS Sujii, KD Schwarcz, JB Pinheiro, RR Rodrigues, PHS Brancalion & MI Zucchi. 2019. Diversity, genetic structure, and population genomics of the tropical tree Centrolobium tomentosum in remnant and restored Atlantic forests.
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Nov 14
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Epigenetic dynamics in plants
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Gehring, M. 2019. Epigenetic dynamics during flowering plant reproduction: evidence for reprogramming?
Sijacic P, M Bajic, EC McKinne, RB Meagher, & RB Dea. 2018. Changes in chromatin accessibility between Arabidopsis stem cells and mesophyll cells illuminate cell type-specific transcription factor networks.
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Nov 21
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The evolution of anthocyanin pathway enzymes
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Bar-Even, A, E Noor, Y Savir, W Liebermeister, D Davidi, DS Tawfik , & R Milo. 2011. The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters.
Wheeler, LC, & SD Smit. 2019. Computational modeling of anthocyanin pathway evolution: biases, hotspots, and trade-offs. .
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Dec 5
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Evolutionary genetics of crop domestication & improvement
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Purugganan, MD. 2019. Evolutionary insights into the nature of plant domestication. .
Fang, H , X Fu, Y Wang, J Xu, H Feng, W Li, J Xu, O Jittham, X Zhang, L Zhang, N Yang, G Xu, M Wang, X Li, J Li, J Yan, & X Yang. 2019. Genetic basis of kernel nutritional traits during maize domestication and improvement.
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Dec 10
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The genetics of crop arbuscular mycorrhizal symbioses
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Lehnert, H, A Serfling, M Enders, W Friedt, & F Ordon. 2017. Genetics of mycorrhizal symbiosis in winter wheat (Triticum aestivum).
(for a review, you might reread from week 2:
Choi, J, W Summers, and U Paszkowski. 2018. Mechanisms underlying establishment of arbuscular mycorrhizal symbioses. )
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